PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g02210.1
Common NameLR48_Vigan06g031100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 173aa    MW: 18681.2 Da    PI: 9.1359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g02210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-173281255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vang07g02210.1 32 KYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 81
                    8******99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-303190IPR001471AP2/ERF domain
CDDcd000182.58E-273291No hitNo description
SuperFamilySSF541713.33E-213290IPR016177DNA-binding domain
PfamPF008473.4E-113281IPR001471AP2/ERF domain
SMARTSM003805.7E-383295IPR001471AP2/ERF domain
PROSITE profilePS5103222.2863289IPR001471AP2/ERF domain
PRINTSPR003672.6E-113344IPR001471AP2/ERF domain
PRINTSPR003672.6E-117191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MELQGRTQGG EREPTSKRSG VAVAVAVEGE RKYKGIRMRK WGKWVAEIRE PNKRSRIWLG  60
SYSTPVAAAR AYDTAVFYLR GPSARLNFPD LLVGEGAALV AGCDMSAASI RKKAIEVGAR  120
VDALQASLHH HHVAPPLPEL LSRGDGGGSG DFAVDLNKMP EPESEDCKWD VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143189463ATERF1
3gcc_A1e-143189463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156777.11e-94hypothetical protein PHAVU_002G016700g
SwissprotQ9SNE17e-54ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A0L9UQ521e-124A0A0L9UQ52_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T4W11e-124A0A0S3T4W1_PHAAN; Uncharacterized protein
STRINGGLYMA11G05700.27e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.15e-51DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]